Issue 
A&A
Volume 632, December 2019



Article Number  A22  
Number of page(s)  6  
Section  Numerical methods and codes  
DOI  https://doi.org/10.1051/00046361/201936487  
Published online  21 November 2019 
PreProFit: Pressure Profile Fitter for galaxy clusters
INAFOsservatorio Astronomico di Brera, via Brera 28, 20121 Milano, Italy
email: fabio.castagna@inaf.it
Received:
9
August
2019
Accepted:
19
September
2019
Galaxy cluster analyses based on highresolution observations of the Sunyaev–Zeldovich (SZ) effect have become common in the last decade. We present PreProFit, the first publicly available code designed to fit the pressure profile of galaxy clusters from SZ data. PreProFit is based on a Bayesian forwardmodelling approach, allows the analysis of data coming from different sources, adopts a flexible parametrization for the pressure profile, and fits the model to the data accounting for Abel integral, beam smearing, and transfer function filtering. PreProFit is computationally efficient, is extensively documented, has been released as an open source Python project, and was developed to be part of a joint analysis of Xray and SZ data on galaxy clusters. PreProFit returns χ^{2}, model parameters and uncertainties, marginal and joint probability contours, diagnostic plots, and surface brightness radial profiles. PreProFit also allows the use of analytic approximations for the beam and transfer functions useful for feasibility studies.
Key words: methods: data analysis / methods: numerical / methods: statistical / galaxies: clusters: intracluster medium / cosmic background radiation
© ESO 2019
1. Introduction
Galaxy clusters are the largest and most massive gravitationally bound objects in the Universe, and thus they offer a unique tracer of cosmic evolution. The thermodynamic properties of a galaxy cluster can be gathered from observation in the optical band, the Xray band, or microwaves. The hot gas trapped in the cluster’s gravitational potential leaves an imprint on the microwave sky because its electrons Compton scatter the photons of the cosmic microwave background radiation (Sunyaev & Zeldovich 1970, 1972). The distortion is best observable at millimetre wavelengths and is directly proportional to the pressure distribution in the clusters. Specifically, the amplitude of the SZ effect is parametrized as the Compton y parameter.
The number of highresolution SZ instruments has progressively increased throughout the last decade, including the NIKA^{1} camera (Monfardini et al. 2010) and the GISMO^{2} camera (Staguhn et al. 2008) at the IRAM^{3} 30m telescope, the MUSTANG^{4} camera (Dicker et al. 2008) on the 100 m Robert C. Byrd Green Bank Telescope, the Planck satellite (Planck Collaboration Int. V 2013), the Bolocam array (Czakon et al. 2015) and the MUSIC^{5} camera (Sayers et al. 2019) on the Caltech Submillimeter Observatory, and the ALMA^{6}+ACA^{7} and CARMA^{8} (Woody et al. 2004) arrays. Furthermore, a new generation of instruments such as NIKA2 (Calvo et al. 2016), MUSTANG2 (Dicker et al. 2014), and TolTEC (Austermann et al. 2018) have recently been developed, which have improved the quality and quantity of SZ data.
Several studies on the SZ effect have been performed (e.g. Birkinshaw et al. 2005; Mroczkowski et al. 2009; Korngut et al. 2011; Sayers et al. 2013; Adam et al. 2015; Romero et al. 2017) and the methodologies for operating with these data are constantly evolving. In most cases, the SZ data analysis improves in order to meet the specific demands of each analysis (e.g. using the actual beam in place of a Gaussian approximation of it).
In this paper, we present PreProFit, which is, to the best of our knowledge, the first publicly available code for fitting the pressure profile of galaxy clusters. PreProFit is meant to automate and generalize all the phases of data analyses in an efficient and easytouse software pipeline, and therein lies its most remarkable feature.
PreProFit includes highly timeconsuming operations such as convolutions. As a result, our purpose throughout the software development was to find a way to perform these tasks sufficiently quickly, but without losing accuracy. PreProFit is able to analyse data coming from different sources and also allows the use of analytic approximations for the beam and transfer functions, useful for feasibility studies, or to make use of published data with only approximate information on theses quantities. PreProFit has been developed to be part of a joint analysis of Xray and SZ data on galaxy clusters.
The paper is organised as follows: in Sect. 2 we provide an overview of the software, as well as the technical requirements; in Sect. 3 we describe in detail the methodology behind each step of the program; and in Sect. 4 we present an application of PreProFit on real data from the galaxy cluster CL J1226.9+3332. We conclude with the discussion and final remarks in Sect. 5.
2. PreProFit
2.1. Program flow
PreProFit adopts a flexible parametrization for the pressure profile of the cluster and properly derives the surface brightness profile to be compared with the observed data. It assumes spherical symmetry for the cluster, as in most analyses (e.g. Comis et al. 2011; Adam et al. 2015; Romero et al. 2015, 2017). As outlined in Fig. 1, PreProFit projects the threedimensional pressure profile into a twodimensional map using the forward Abel transform. The map is then convolved with the instrumental beam and the transfer function. With opportune conversion factors, we finally derive the surface brightness profile, whose fit to the data is measured through the likelihood function of the model. PreProFit automatically produces a number of diagnostic plots, including the model and data radial surface brightness profile.
Fig. 1. Block diagram showing the program flow. 
2.2. Requirements and installation
PreProFit was developed and tested with Python 3.6. The following libraries were required to build: mbproj2, PyAbel, numpy, scipy, astropy, emcee, six, matplotlib, corner. PreProFit can be downloaded from GitHub^{9}.
3. Methods
3.1. Key stages
To follow, we present a step by step description of PreProFit working principles, as illustrated in Fig. 1.
3.1.1. Pressure profile
The pressure profile is described by the generalized Navarro, Frenk & White (gNFW) model proposed by Nagai et al. (2007):
$$\begin{array}{c}\hfill {P}_{e}(r)=\frac{{P}_{0}}{{\left(\frac{r}{{r}_{p}}\right)}^{c}{(1+{\left(\frac{r}{{r}_{p}}\right)}^{a})}^{\frac{bc}{a}}},\end{array}$$(1)
where P_{0} is a normalizing constant and r_{p} is a scale radius. The exponentials b and c describe the logarithmic slopes at r/r_{p} ≫ 1 and r/r_{p} ≪ 1, respectively, while a governs the rate of turnover between these two slopes. The five parameters make the model very flexible; they can fit current data and allow users to identify which parameters are constrained by the data.
3.1.2. Abel integral
The threedimensional pressure model is numerically integrated along the line of sight in order to obtain a twodimensional map of the Compton y parameter. This is performed according to the Abel transform:
$$\begin{array}{c}\hfill y(R)=\frac{{\sigma}_{T}}{{m}_{e}{c}^{2}}{{\displaystyle \int}}_{R}^{{R}_{b}}\frac{2r{P}_{e}(r)}{\sqrt{{r}^{2}{R}^{2}}}\phantom{\rule{0.166667em}{0ex}}\mathrm{d}r,\end{array}$$(2)
where σ_{T} is the electron Thompson scattering cross section, m_{e} is the electron rest mass, c is the speed of light, and R_{b} is the cluster radial extent. To calculate the integral, PreProFit makes use of the welldeveloped Python function direct_transform from the PyAbel library.
At this stage, we create a twodimensional map for the Compton y parameter profile adopting a regular grid and complying with radial symmetry.
3.1.3. Beam smearing
In order to consider the effects of the instrument used for observing the cluster, we need to convolve our model map with the beam. PreProFit supports either to read the beam data from a file or to approximate it with a Gaussian distribution (e.g. based on the instrumental full width at half maximum) when, for example, these data are not available. By default, the beam map is normalized to have an integral of one, but it can even be left as such on user request. The convolution is performed via fast Fourier transform (FFT).
3.1.4. Transfer function
After convolving with the beam, the input transfer function^{10} is applied to the model in the Fourier space. If requested, PreProFit allows the use of an approximation based on the cumulative distribution function of a Gaussian with location, scale, and normalization parameters chosen by the user. From the radial transfer function profile, we construct a twodimensional transmission image assuming radial symmetry. To pass our model through the signal transfer function, we multiply the unfiltered map in the Fourier space with the transmission image just created. Compared to implementations in Adam et al. (2015) and Romero et al. (2017), PreProFit adopts a more general approach for the transfer function filtering allowing free values for the image pixel size and the transfer function sampling step.
3.1.5. Conversion to surface brightness
To compare our model map with the observed data, the filtered Compton y parameter map is converted into surface brightness, measured in Jy beam^{−1}, using the input conversion factor.
3.2. Model definition
The whole set of operations described in the previous sections represents our model, which allows us to derive a surface brightness map from a parametrized pressure profile. From the surface brightness map, we extract the radial profile and compare it with the measured data, thus setting up the likelihood function of the model, the probability of observing the data given the model parameters. As in previous analyses (e.g. Adam et al. 2015; Ruppin et al. 2017), we adopt the likelihood function:
$$\begin{array}{c}\hfill \mathcal{L}=exp(\frac{{\chi}^{2}}{2}),\end{array}$$(3)
where
$$\begin{array}{c}\hfill {\chi}^{2}={\displaystyle \sum _{i=1}^{n}}{\left(\frac{{f}_{i}^{\mathrm{data}}{f}_{i}^{\mathrm{model}}}{{\sigma}_{i}^{\mathrm{data}}}\right)}^{2}\xb7\end{array}$$(4)
Here f^{data} and f^{model} are the observed and the estimated surface brightness value, respectively, while σ^{data} is the error on the data and n is the number of available data points.
3.3. Markov chain Monte Carlo algorithm
The posterior is sampled with an affineinvariant ensemble sampler proposed by Goodman & Weare (2010) and implemented in emcee (ForemanMackey et al. 2013). The user has to specify the list of parameters to be fitted, and optionally can change the bounds of each parameter’s prior uniform distribution. The user is free to fix the desired number of random walkers, the number of iterations, and the burnin period extent, as well as the starting values of the chains. Multithreading computation is supported by PreProFit and is strongly encouraged to minimize the time of execution.
Qualitative and quantitative diagnostics are both provided by PreProFit to evaluate whether the chains adequately converge to the stationary distribution. First of all, the acceptance fraction is automatically displayed in the program output. Next, PreProFit allows the traceplot and the cornerplot to be reproduced, which inform about the evolution of the parameter values across the iterations and the joint posterior distribution, respectively. Finally, the user can visualize the best (median) fitting surface brightness profile, together with its confidence interval (CI), and compare it to the observed data. The χ^{2} value and the number of degrees of freedom are also given.
3.4. Validation
The whole processing pipeline has been validated in its entirety. The direct_transform function, which calculates the Abel integral, is approximately 50 times faster than the common quad function from the Scipy library (Jones et al. 2001) and keeps its accuracy within 0.8% of the true values. The fftconvolve, fft2, ifft2 functions, used for convolution, and direct and inverse Fourier transform computation, respectively, come from the wellknown Scipy Python library. To the best of our knowledge, they are the most computationally efficient functions for performing such operations. The fftconvolve function is about 100 times faster than the standard convolve2d function, also from the Scipy library, and reports a < 10^{−7}% approximation error. As an additional test of the beam smearing (see Sect. 3.1.3), we compared the performance of fftconvolve with a direct convolution using MIDAS (Banse et al. 1983): our implementation is more than ten times faster, with a systematic error lower than 10^{−7}%. We even checked the computational accuracy in the case of a convolution between two Gaussians whose solution is analytic: the relative difference is below 10^{−7}% again.
3.5. Execution time
The fit of pressure profile can be extremely slow (e.g. Ruppin et al. 2019) because of the Abel integral, beam convolution, and transfer function filtering. By working on the different steps, we achieved a balanced load: Abel transform requires 33% of the CPU time, twodimensional image interpolation 18%, beam smearing 24%, transfer function filtering 23%, and other minor operations account for the remaining 2%.
4. A worked example
To highlight the potentiality of PreProFit, we present an application of the program on real data. We chose to analyse the highredshift cluster of galaxies CL J1226.9+3332 (z = 0.89), which has been largely studied by several authors in recent years, both in the Xray (Maughan et al. 2004, 2007; Donahue et al. 2014) and in SZ (Mroczkowski et al. 2009; Korngut et al. 2011; Sayers et al. 2013; Adam et al. 2015; Romero et al. 2017, 2018). CL J1226.9+3332 is a hot and massive cluster, discovered in 2001 with the ROSAT WARPS survey (Ebeling et al. 2001). The cluster presents a relaxed morphology on a large scale, with some possible evidence of a disturbed core (Maughan et al. 2007; Korngut et al. 2011; Adam et al. 2015; Romero et al. 2017). In our work we flagged the point source detected by Adam et al. (2015) at (RA, Dec) = (12:26:59.855,+33:32:35.21).
4.1. NIKA
The SZ observation, instrumental beam, transfer function, and spectral conversion coefficient used in the example come from the publicly available NIKA data release^{11}. We refer the reader to Adam et al. (2015) for more details about the cluster observation, even though we remark how the data on the site were reduced and filtered in a slightly different way. In Fig. 2 we show the beam profile and the transfer function, as well as their normal and cumulative normal approximations, to illustrate the behaviour of PreProFit when using such approximations.
Fig. 2. Left panel: beam profile. Right panel: transfer function profile. Measured profiles are in blue, the approximations used for Fig. 6 in green. 
4.2. Model definition
By leaving all the gNFW parameters in Eq. (1) free, we found that parameter c is unconstrained by the data; therefore, we fixed c = 0.014 as in Adam et al. (2015) and let the other parameters free to vary. As priors we took
$$\begin{array}{cc}\hfill \mathrm{\Theta}& =\{({P}_{0},{r}_{p},a,b)\in {\mathbb{R}}^{4}:0<{P}_{0}<1,\phantom{\rule{0.166667em}{0ex}}\hfill \\ \hfill & \phantom{\rule{2em}{0ex}}100<{r}_{p}<1000,\phantom{\rule{0.166667em}{0ex}}0.5<a<5,\phantom{\rule{0.166667em}{0ex}}3<b<7\},\hfill \end{array}$$
where P_{0} is expressed in keV cm^{−3} and r_{p} in kpc.
We ran 5000 iterations of 14 chains and considered the first 3000 as the burnin period. We extracted the starting values of the chains from a Gaussian distribution with μ = (0.4, 300, 1.33, 4.13) and σ = 0.1 for all parameters. We considered a sampling step of 2 arcsec and a cluster radial extent of 5 Mpc for the Abel integral computation. The Compton y to Jy beam^{−1} conversion factor is taken from Adam et al. (2015). We adopt a flat ΛCDM cosmology with H_{0} = 67.32 km s^{−1} Mpc^{−1}, Ω_{M} = 0.3158, and Ω_{Λ} = 0.6842 (Planck Collaboration VI 2019).
4.3. Results
Trace plot and joint plus marginal posterior distributions, which are automatically produced by PreProFit, are shown in Fig. 3. The trace plot suggests that the chains adequately explored the parameter space and this regular behaviour is confirmed by the acceptance fraction value equal to 0.43. As expected, b is largely degenerate with r_{p}. Figure 4, which is automatically generated as well, shows the bestfit profile and its 95% CI superimposed on the observed data. We found χ^{2} = 24.2 for 15 degrees of freedom.
Fig. 3. Diagnostic plots automatically produced by PreProFit. Left panel: trace plot. Right panel: joint and marginal posterior distributions. 
Fig. 4. Surface brightness profile (points with 68% error bars) and best fitting profile with 95% CI. This plot is automatically generated by PreProFit. 
Figure 5 compares our pressure profile against corresponding published results from Romero et al. (2018) and Adam et al. (2015) using the same NIKA data, even though they are differently reduced, and therefore have a different transfer function. The former made a nonparametric fit, which requires an unknown and uncertain deprojection correction of the outermost point, not included in the error budget. The latter added Planck and Chandra data and performed a joint fit: we read values without errors from their Fig. 8. There is a good agreement among the three derivations, except at scales corresponding to the instrument radial field of view (around 1 Mpc), where derivations are uncertain, as is clearly documented in the literature (e.g. Sayers et al. 2016; Romero et al. 2019).
Fig. 5. Comparison of CL J1226.9+3332 pressure profiles. Our best fit is plotted in blue (95% CI shaded); the red points are from the nonparametric fit of Romero et al. (2018) on NIKA data (68% error bars); the black diamonds without error bars refer to the fit of Adam et al. (2015) on NIKA, Chandra, and Planck data. 
In Fig. 6, we demonstrate how close or different the results from either measured or approximated instrumental data turn out to be. Differences across surface brightness profiles are comparable to observed errors, indicating that approximated beam and transfer functions might be suitable for feasibility studies, but are unlikely to be useful for science analyses for data of this quality.
Fig. 6. Surface brightness profiles derived for various combinations of beam and transfer function, as specified in the inset, for a single set of pressure profile parameters. Points with 68% error bars show the data. 
5. Conclusion
The amount of data collected through SZ observations has regularly increased in recent years. We have introduced a Python program, PreProFit, that allows users to estimate the pressure profile of galaxy clusters through flexible and efficient modelization. PreProFit is the first publicly available code to perform this kind of analysis and, notably, it is extensively documented; by allowing the analysis of data coming from different sources, it can be useful to a wide community. PreProFit relies on a Bayesian forwardmodelling approach.
Users are free to set up PreProFit in accordance with their needs and requirements. Among other things, users can decide how many and which parameters to fit, which (uniform) prior to adopt for the free parameters, and whether to conduct a feasibility study using approximations for the beam and the transfer function. PreProFit returns χ^{2}, model parameters and uncertainties, marginal and joint probability contours, diagnostic plots, and surface brightness radial profiles.
After describing in detail each stage of the data processing pipeline, we presented an application of the program on the highredshift galaxy cluster CL J1226.9+3332, using SZ observations from the NIKA camera. We outlined the main plots and Bayesian diagnostics produced by PreProFit. We noted that, as is documented in the literature (e.g. Sayers et al. 2016; Romero et al. 2019), it is very difficult to constrain the pressure profile near or beyond the instrument radial field of view.
The release of PreProFit lays the groundwork for an enhanced version of the code that allows us to join the SZ analysis to a threedimensional (RA, Dec, energy) analysis of Xray data to perform a powerful joint SZplusX analysis.
The transfer function (transmission) is often obtained as the square root of the ratio of the onedimensional power spectra of the observed fake sky and input fake sky (Romero et al. 2017).
Acknowledgments
We thank the referee for the useful comments on the manuscript. F.C. acknowledges financial contribution from the agreement ASIINAF n.201714H.0 and PRIN MIUR 2015 Cosmology and Fundamental Physics: Illuminating the Dark Universe with Euclid.
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All Figures
Fig. 1. Block diagram showing the program flow. 

In the text 
Fig. 2. Left panel: beam profile. Right panel: transfer function profile. Measured profiles are in blue, the approximations used for Fig. 6 in green. 

In the text 
Fig. 3. Diagnostic plots automatically produced by PreProFit. Left panel: trace plot. Right panel: joint and marginal posterior distributions. 

In the text 
Fig. 4. Surface brightness profile (points with 68% error bars) and best fitting profile with 95% CI. This plot is automatically generated by PreProFit. 

In the text 
Fig. 5. Comparison of CL J1226.9+3332 pressure profiles. Our best fit is plotted in blue (95% CI shaded); the red points are from the nonparametric fit of Romero et al. (2018) on NIKA data (68% error bars); the black diamonds without error bars refer to the fit of Adam et al. (2015) on NIKA, Chandra, and Planck data. 

In the text 
Fig. 6. Surface brightness profiles derived for various combinations of beam and transfer function, as specified in the inset, for a single set of pressure profile parameters. Points with 68% error bars show the data. 

In the text 
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