Issue 
A&A
Volume 571, November 2014



Article Number  A42  
Number of page(s)  6  
Section  The Sun  
DOI  https://doi.org/10.1051/00046361/201424315  
Published online  06 November 2014 
Image compression in local helioseismology
^{1}
Institut für Astrophysik, GeorgAugust Universität Göttingen,
37077
Göttingen,
Germany
email:
loeptien@astro.physik.unigoettingen.de
^{2}
MaxPlanckInstitut für Sonnensystemforschung,
JustusvonLiebigWeg 3,
37077
Göttingen,
Germany
Received: 30 May 2014
Accepted: 14 August 2014
Context. Several upcoming helioseismology space missions are very limited in telemetry and will have to perform extensive data compression. This requires the development of new methods of data compression.
Aims. We give an overview of the influence of lossy data compression on local helioseismology. We investigate the effects of several lossy compression methods (quantization, JPEG compression, and smoothing and subsampling) on power spectra and timedistance measurements of supergranulation flows at disk center.
Methods. We applied different compression methods to tracked and remapped Dopplergrams obtained by the Helioseismic and Magnetic Imager onboard the Solar Dynamics Observatory. We determined the signaltonoise ratio of the travel times computed from the compressed data as a function of the compression efficiency.
Results. The basic helioseismic measurements that we consider are very robust to lossy data compression. Even if only the sign of the velocity is used, timedistance helioseismology is still possible. We achieve the best results by applying JPEG compression on spatially subsampled data. However, our conclusions are only valid for supergranulation flows at disk center and may not be valid for all helioseismology applications.
Key words: Sun: helioseismology / methods: data analysis
© ESO, 2014
1. Introduction
Efficient compression of helioseismic data plays an important role in space missions, where it helps reduce the amount of telemetry required for transmitting data. The currently running Helioseismic and Magnetic Imager (HMI, Schou et al. 2012) is not very limited in telemetry and relies on quantization and lossless compression only. On the other hand, the Michelson Doppler Imager (MDI) instrument (Scherrer et al. 1995) had to use extensive data compression. During the mediumℓ program (Kosovichev et al. 1996, 1997), for example, the images were cropped, smoothed and subsampled, and quantized before applying lossless compression to the data.
Some upcoming missions, such as the Solar Orbiter mission (Marsch et al. 2000; Marsden & Müller 2011; Löptien et al. 2014), will also have a low bandwidth for transferring data. These missions can, of course, benefit from the experience in compression obtained by previous missions, in particular MDI. However, compression efficiency can certainly be improved, especially when using lossy compression algorithms. The behavior of lossy methods is complex and involves a tradeoff between the compression efficiency and the amount of noise caused by the compression. The impact of compression artifacts might also change for different helioseismic measurements.
Like in many other cases, helioseismology can benefit from the experience with compression in Earth seismology. When analyzing seismic noise, it is common to use only the sign of the oscillations. This helps in the analysis because it removes seismic events with large amplitudes (e.g., Aki 1965; Hanasoge & Branicki 2013).
In this work, we give a first overview of lossy data compression in local helioseismology. We test the impact of compression on two of the most basic helioseismic measurements: the power spectrum and timedistance helioseismology of supergranulation at disk center. We start from Dopplergrams obtained by the HMI instrument, apply different compression methods (quantization, JPEG compression, and smoothing and subsampling) to the data and discuss their influence on the resulting power spectra and travel time maps. This allows us to give a first estimate on the quality and the efficiency of these compression methods.
2. Compression schemes
2.1. Quantization and Huffman encoding
Quantization compresses data by reducing the number of bits per pixel used for storing the data. The number of bits per pixel determines how many different values n the velocity can assume, e.g., for five bits per pixel n = 32. Hence, quantization reduces the precision of the velocity.
We apply quantization to the Dopplergrams by rounding the velocity to a number of possible values n which are evenly distributed between the lowest and highest velocity in the timeseries. The properties of the noise introduced by the quantization depends on n. For high n, this quantization noise is spatially uncorrelated and is roughly equivalent to white noise. Lower values of n lead to a dependence of the quantization noise on the input velocities, causing sharp edges in the Dopplergrams. A special case is n = 2; here it is only possible to distinguish between up and downflows relative to the mean velocity.
Additional compression can be achieved by combining quantization with a lossless compression algorithm. Quantization only decreases the number of bits per pixel that are saved to a fixed value. However, using a fixed number of bits per pixel is not very efficient, since the histogram of the velocities does not correspond to a uniform distribution. Velocities with low amplitudes are much more frequent than those with high amplitudes. We apply Huffman encoding (Huffman 1952), an entropybased lossless compression algorithm which uses a nonconstant number of bits per pixel for storing the data. More frequent values of the velocity are saved using fewer bits per pixel than less frequent ones.
The efficiency of Huffman compression depends on the statistics of the input data. The more information there is in the data, the larger the file size of the compressed data. Since the velocities in the Dopplergrams are spatially and temporally correlated, we decrease the amount of information significantly by predicting the velocity of each pixel from the surrounding pixels both in time and space using linear regression. Standard Huffman encoding does not allow us to reach file sizes smaller than one bit per pixel because every pixel is saved separately. We avoid this by concatenating the velocities from three consecutive pixels into one symbol before using the Huffman compression.
We test quantization for different values of n, ranging from 256 to two. In reality, the velocity would probably not be rounded to a fixed number of possible values between the lowest and highest velocity in the image, but it would be truncated to a fixed precision. This is better if e.g., cosmic rays or gradients in velocity across the image are present.
2.2. JPEG compression
Another option for compressing data is to truncate the coefficients of some spatial transformation of the data. This leads to a loss of information about small spatial scales. A common example for such a method is JPEG (Joint Photographic Experts Group) compression (Wallace 1992).
JPEG compression divides the data into blocks with a size of 8 × 8 pixels, then a discrete cosine transform (DCT) is applied to each block. The coefficients of the DCT are truncated depending on a quality factor q that has to be selected as an input parameter (between 0 and 100, with a lower factor meaning a higher compression ratio) and compressed using Huffman encoding. JPEG compression does not benefit from combining it with quantization. The sharp edges in the Dopplergrams introduced by the quantization affect the higher coefficients of the DCT and increase the file size.
We use the standard JPEG compression algorithm implemented in IDL^{1} and test different values of the quality factor q (between 5 and 100).
2.3. Smoothing and subsampling
Another method for reducing the size of the data is decreasing the spatial resolution by subsampling the data. Subsampling decreases the Nyquist wavenumber of the data. In our case, we use only 2 × 2 subsampling on HMI data near disk center, meaning that the Nyquist wavenumber is still at kR_{⊙} ≈ 3100. So, aliasing only has a small influence on the power spectrum and it is sufficient to convolve the Dopplergrams with a narrow Gaussian (σ = 0.4 pixels) to remove artifacts resulting from aliasing. After subsampling, we apply one of the two compression methods described above to the Dopplergrams.
Fig. 1
Examples of uncompressed and compressed Dopplergrams. Top left: uncompressed data, top right: quantization (two velocity bins), bottom left: JPEG compression (quality = 5), bottom right: 2 × 2 subsampling combined with JPEG compression with a quality of 10. The artifacts resulting from the compression are clearly visible in the Dopplergrams. Quantization causes sharp edges in the image; if n = 2, only upflows and downflows can be separated. JPEG compression leads to blocks in the image with a size of 8 × 8 pixels, corresponding to 2.78 Mm or 5.56 Mm, if 2 × 2 subsampling is used. The images shown represent only a small part of the full size of the Dopplergrams (178 × 178 Mm). 
3. Results
3.1. Input observations
Our analysis is based on Dopplergrams for the quiet Sun provided by the HMI instrument. This instrument obtains filtergrams at six wavelength positions around the Fe I 6173 Å line and transmits them to Earth, where the observables, e.g., Dopplergrams, are computed. Since HMI is basically unlimited in telemetry, the raw images that are downlinked by HMI have a size of ~7.1 bits per pixel. Hence, the precision of the resulting Dopplergrams is far beyond the photon noise level.
We use twenty timeseries of Dopplergrams obtained in May 2010 that are tracked and remappped at the equator corresponding to the Mt Wilson 1982/84 differential rotation rate (Snodgrass 1984) around the central meridian. Each of the timeseries has a length of eight hours and a size of 178 × 178 Mm (512 × 512 pixels, spatial resolution: 0.348 Mm). The tracked and remapped Dopplergrams are saved in single precision (32 bits per pixel). In the next step, we apply the various compression schemes described in Sect. 2 to the data. We study a broad range of parameters (velocity bins n and quality factor q), but the results we present in the following sections are mostly for the highest compression factors since these show the strongest influence of compression.
Examples of extremely compressed Dopplergrams are shown in Fig. 1. They clearly show the artifacts resulting from the compression. Quantization reduces the number of possible values of the velocity, causing sharp edges in the Dopplergrams, and JPEG compression leads to artifacts in the image based on the blocks used for the JPEG compression.
Fig. 2
Compression artifacts in azimuthally averaged power spectra. Top left: uncompressed data, top right: quantization (two velocity bins), bottom left: JPEG compression (quality = 5), bottom right: 2 × 2 subsampling combined with JPEG compression with a quality of 10. All four power spectra are plotted using the same logarithmic colorscale (red corresponds to high power, blue to low power) and are averages from twenty timeseries, each of them having a length of eight hours. We normalized the bittruncated Dopplergrams to have the same variance as the uncompressed data before computing power spectra. All compression methods slightly decrease the power of the modes and add additional noise to the power. The noise caused by quantization is almost flat, the noise caused by JPEG compression exhibits a more complex behavior, including several ridges appearing at high wavenumbers and a reduction of the power arising from granulation. In Fig. 3, we show cuts through the power spectra along the dashed lines. 
3.2. Influence on helioseismic power spectra
The most basic tool in helioseismology is the power spectrum as a function of wavenumber and frequency. In Figs. 2 and 3, we compare azimuthally averaged power spectra for uncompressed and examples of extremely compressed data (quantization with two bins in velocity, JPEG compression with a quality factor of five, and JPEG compression with q = 10 applied to 2 × 2 subsampled data).
Even for high compression factors, the p and fmodes are still clearly visible in the power spectrum. However, depending on the compression factor, the compression decreases the power of the oscillations and adds noise. The characteristics of the compression noise depend on the method. Quantization adds an almost flat background noise to the power spectrum. The noise caused by the JPEG compression exhibits a more complicated shape. For very low quality factors, several ridges appear at high wavenumbers, depending on the spatial resolution of the data. In addition, the power arising from granulation is reduced significantly.
Fig. 3
Cuts through the azimuthally averaged power spectra shown in Fig. 2 (cut along the dashed lines). Top: power at a constant frequency, ν = 3.4 mHz, bottom: power at a constant wavenumber, kR_{⊙} = 466. Four configurations are shown. Thick solid black curve: no compression is applied to the data, thick dashed blue curve: the Dopplergrams are compressed using quantization (two velocity bins), solid red curve: JPEG compression (quality = 5), dashed green curve: 2 × 2 subsampling and JPEG compression with a quality of 10. The power shown is an average of twenty timeseries, each of them having a length of eight hours. We normalized the bittruncated Dopplergrams to have the same variance as the uncompressed data before computing power spectra. All compression methods slightly decrease the power of the modes and add additional noise to the power. 
Fig. 4
Examples of travel time maps of supergranulation (fmode, centertoannulus geometry, annulus size 13.4 Mm, outward minus inward travel times) computed from compressed and uncompressed Dopplergrams. Top left: uncompressed data, top right: quantization (two velocity bins), bottom left: JPEG compression (quality = 5), bottom right: 2 × 2 subsampling combined with JPEG compression with a quality of 10. The travel times clearly show the supergranulation pattern. They correspond to the divergence of horizontal flows, with negative values indicating outflows and positive values showing inflows. 
3.3. Influence on supergranulation travel times
We evaluate the influence of the compression methods described in Sect. 2 on timedistance helioseismology (Duvall et al. 1993) by computing travel time maps for the fmode using pointtoannulus geometry (annulus size 13.2 Mm) and by taking the difference in travel times between outwardgoing and inwardgoing waves. These travel times are sensitive to the horizontal divergence of nearsurface flows (Duvall & Gizon 2000), such as supergranulation. Examples of the resulting travel time maps are shown in Fig. 4.
Although the compression introduces additional noise, the travel time maps for quantization and JPEG compression are almost indistinguishable from the uncompressed case. The correlation between uncompressed and compressed travel times is only for extreme compression ratios smaller than 0.99 (see Table 1). There is also no apparent correlation of the noise caused by compression with the travel times.
Properties of travel time maps (centertoannulus geometry, outward minus inward travel times) computed from compressed data.
Fig. 5
Azimuthally averaged power of travel times (centertoannulus geometry, outward minus inward travel times) derived from observations (blue curve) and a noise model (red curve). Top left: uncompressed data, top right: quantization (two velocity bins), bottom left: JPEG compression (quality = 5), bottom right: 2 × 2 subsampling combined with JPEG compression with a quality of 10. The power shown is an average from twenty timeseries, each of them having a length of eight hours. The shaded areas show the 1σ scatter of the individual realizations. The compression slightly decreases the signal and increases the noise. The vertical arrows denote the wavenumbers used for determining the S/N in Fig. 6 and Table 1. 
When deciding on a compression method, two things are important: the quality of the compressed data and the compression efficiency. These depend on the parameters of the compression (the number of velocity bins n of the quantization or the quality factor q of the JPEG compression). Determining the compression efficiency is straightforward; here we determine the quality of the compressed data by comparing the signaltonoise ratio (S/N) with the uncompressed data.
The S/N of travel time maps is defined as the difference between the power of the travel times computed from the observations and a noise model divided by the noise (Gizon & Birch 2004; Fournier et al. 2014). Both the observations and the noise model are affected by compression. As can be seen in Fig. 5, the compression slightly decreases the power caused by the supergranulation and enhances the effect of the realization noise. This decreases the S/N.
We determine the S/N at two wavenumbers which correspond to the length scale of supergranulation (kR_{⊙} = 122 and kR_{⊙} = 221, indicated by the vertical arrows in Fig. 5). In Table 1 and in Fig. 6, we show the resulting S/N and the file sizes for the different compression methods while varying the parameters of the compression (the number of velocity bins n for the quantization and the quality factor q of the JPEG compression). Since the behavior of the compression methods is very similar at these two wavenumbers, we show only the S/N at kR_{⊙} = 122 in the figure.
All compression methods decrease the file size significantly; a compression to a file size of one bit per pixel is possible without any major influence on the S/N. However, there are large differences between the individual methods. In general, JPEG achieves a better S/N than the combination quantization and Huffman encoding, especially for high compression factors. A quality factor of ten leads to a S/N of 38 at kR_{⊙} = 122 which is comparable to the S/N of the uncompressed data (S/N = 40). This corresponds to a file size of 0.43 bits per pixel. Additional compression can be achieved by using JPEG compression on 2 × 2 subsampled data. This is the best method tested in this study. No matter which S/N is required (except for a S/N> 39.5), this compression scheme leads to the smallest file size. A further reduction of the spatial resolution is not advisable, using 4 × 4 subsampling significantly reduces the S/N (the maximum S/N is 20). The spatial resolution of 4 × 4 subsampled data is 4 × 0.348 = 1.392 Mm. This is comparable to the typical wavelength of the fmode (~4−8 Mm); 4 × 4 subsampling might work better for pmodes which have at the same frequency a larger wavelength than the fmode.
Fig. 6
S/N of travel times (centertoannulus geometry, outward minus inward travel times) at a wavenumber of kR_{⊙} = 98−147 as a function of the file size in bits per pixel (relative to the data with full spatial resolution). We show data for quantization and JPEG compression using both the full spatial resolution and 2 × 2 subsampled data. Black crosses: quantization only (full resolution), blue circles: quantization and Huffman compression (full resolution), red squares: JPEG compression (full resolution), green triangles: JPEG compression and 2 × 2 subsampling. We vary the number of possible values for the velocity n for the quantization and the quality factor q of the JPEG compression (as indicated by the arrows). We do not show the S/N for JPEG compression with q = 5 applied to 2 × 2 subsampled data because it is extremely low (S/N = 7). The S/N shown here is an average computed from twenty realizations. The horizontal line shows the S/N of the uncompressed data. Before computing the S/N, we averaged the power of the travel times from kR_{⊙} = 98−147. Our measurement of the S/N for the uncompressed case has an uncertainty of about 2. The error bars show error estimates for differential S/N measurements relative to the uncompressed case. 
4. Discussion and conclusion
Probing supergranulation flows at disk center seems to be very robust to data compression. However, the good performance of the compression is probably not valid for helioseismology in general. There are helioseismic measurements with a much lower S/N than the simple measurements presented in this paper, for example, weak and deep flows and helioseismology at high latitudes. Most likely, these are much more sensitive to data compression. In addition, centertolimb effects could have a strong effect here. Subsampling and JPEG compression should presumably both be affected by foreshortening when applied close to the limb. The effect of compression on other measurement techniques also needs to be studied. For example, the reduction of the power arising from granulation by the JPEG compression indicates that
granulation tracking will be affected by this compression method. Hence, more work is needed in order to derive a strategy for data compression that can be applied to all sorts of helioseismic measurements.
While the excellent performance of the compression for travel time measurements might be surprising at first, it can be explained by looking at the power spectra. Most of the compression artifacts are located at higher wavenumbers than used in timedistance helioseismology. This means that the filtering applied for the travel time measurements removes most of the compression noise. The noise at the location of the modes is small compared to the power of the oscillations. Hence, it has only minor influence on travel time measurements.
Based on the results shown in Fig. 6, subsampling in combination with JPEG compression seems to be the best of the methods tested here for compressing data for local helioseismology. These results are, of course, limited to HMI. Helioseismic analyses require a minimum spatial resolution, so there is an upper limit on the amount by which the data can be subsampled, depending on the spatial resolution of the instrument and the wavelength of the target waves. For HMI, 2 × 2 subsampling seems to be a good tradeoff between file size and image quality. In combination with JPEG compression (with varying quality factor), this reduces the file size significantly. Which compression factor can be achieved depends on the science goal of the analysis. If a low S/N is sufficient (e.g., for a statistical analysis of supergranulation), the data can be compressed down to ~0.15 bits per pixel (relative to the full spatial resolution). Even if a high S/N is required, a compression to ~0.3 bits per pixel is possible without decreasing the quality of the data too much.
The file sizes can probably be decreased even further. The compression methods presented in this study are very simple and probably not optimal. JPEG compression, for example, is designed to work for photos, not for scientific applications. The efficiency of JPEG could probably also be increased by including the timedomain in the transformation instead of only using the spatial dimensions. This also increased the efficiency of the Huffman compression.
IDL (Interactive Data Language) is a product of EXELIS Visual Information Solutions, http://www.exelisvis.com/
Acknowledgments
We are grateful to Jan Langfellner for providing the tracked and remapped Dopplergrams and the noise cubes. We acknowledge support from Deutsche Forschungsgemeinschaft (DFG) through SFB 963/1 “Astrophysical Flow Instabilities and Turbulence” (Project A1). Support was also provided by European Union FP7 projects SPACEINN and SOLARNET.
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All Tables
Properties of travel time maps (centertoannulus geometry, outward minus inward travel times) computed from compressed data.
All Figures
Fig. 1
Examples of uncompressed and compressed Dopplergrams. Top left: uncompressed data, top right: quantization (two velocity bins), bottom left: JPEG compression (quality = 5), bottom right: 2 × 2 subsampling combined with JPEG compression with a quality of 10. The artifacts resulting from the compression are clearly visible in the Dopplergrams. Quantization causes sharp edges in the image; if n = 2, only upflows and downflows can be separated. JPEG compression leads to blocks in the image with a size of 8 × 8 pixels, corresponding to 2.78 Mm or 5.56 Mm, if 2 × 2 subsampling is used. The images shown represent only a small part of the full size of the Dopplergrams (178 × 178 Mm). 

In the text 
Fig. 2
Compression artifacts in azimuthally averaged power spectra. Top left: uncompressed data, top right: quantization (two velocity bins), bottom left: JPEG compression (quality = 5), bottom right: 2 × 2 subsampling combined with JPEG compression with a quality of 10. All four power spectra are plotted using the same logarithmic colorscale (red corresponds to high power, blue to low power) and are averages from twenty timeseries, each of them having a length of eight hours. We normalized the bittruncated Dopplergrams to have the same variance as the uncompressed data before computing power spectra. All compression methods slightly decrease the power of the modes and add additional noise to the power. The noise caused by quantization is almost flat, the noise caused by JPEG compression exhibits a more complex behavior, including several ridges appearing at high wavenumbers and a reduction of the power arising from granulation. In Fig. 3, we show cuts through the power spectra along the dashed lines. 

In the text 
Fig. 3
Cuts through the azimuthally averaged power spectra shown in Fig. 2 (cut along the dashed lines). Top: power at a constant frequency, ν = 3.4 mHz, bottom: power at a constant wavenumber, kR_{⊙} = 466. Four configurations are shown. Thick solid black curve: no compression is applied to the data, thick dashed blue curve: the Dopplergrams are compressed using quantization (two velocity bins), solid red curve: JPEG compression (quality = 5), dashed green curve: 2 × 2 subsampling and JPEG compression with a quality of 10. The power shown is an average of twenty timeseries, each of them having a length of eight hours. We normalized the bittruncated Dopplergrams to have the same variance as the uncompressed data before computing power spectra. All compression methods slightly decrease the power of the modes and add additional noise to the power. 

In the text 
Fig. 4
Examples of travel time maps of supergranulation (fmode, centertoannulus geometry, annulus size 13.4 Mm, outward minus inward travel times) computed from compressed and uncompressed Dopplergrams. Top left: uncompressed data, top right: quantization (two velocity bins), bottom left: JPEG compression (quality = 5), bottom right: 2 × 2 subsampling combined with JPEG compression with a quality of 10. The travel times clearly show the supergranulation pattern. They correspond to the divergence of horizontal flows, with negative values indicating outflows and positive values showing inflows. 

In the text 
Fig. 5
Azimuthally averaged power of travel times (centertoannulus geometry, outward minus inward travel times) derived from observations (blue curve) and a noise model (red curve). Top left: uncompressed data, top right: quantization (two velocity bins), bottom left: JPEG compression (quality = 5), bottom right: 2 × 2 subsampling combined with JPEG compression with a quality of 10. The power shown is an average from twenty timeseries, each of them having a length of eight hours. The shaded areas show the 1σ scatter of the individual realizations. The compression slightly decreases the signal and increases the noise. The vertical arrows denote the wavenumbers used for determining the S/N in Fig. 6 and Table 1. 

In the text 
Fig. 6
S/N of travel times (centertoannulus geometry, outward minus inward travel times) at a wavenumber of kR_{⊙} = 98−147 as a function of the file size in bits per pixel (relative to the data with full spatial resolution). We show data for quantization and JPEG compression using both the full spatial resolution and 2 × 2 subsampled data. Black crosses: quantization only (full resolution), blue circles: quantization and Huffman compression (full resolution), red squares: JPEG compression (full resolution), green triangles: JPEG compression and 2 × 2 subsampling. We vary the number of possible values for the velocity n for the quantization and the quality factor q of the JPEG compression (as indicated by the arrows). We do not show the S/N for JPEG compression with q = 5 applied to 2 × 2 subsampled data because it is extremely low (S/N = 7). The S/N shown here is an average computed from twenty realizations. The horizontal line shows the S/N of the uncompressed data. Before computing the S/N, we averaged the power of the travel times from kR_{⊙} = 98−147. Our measurement of the S/N for the uncompressed case has an uncertainty of about 2. The error bars show error estimates for differential S/N measurements relative to the uncompressed case. 

In the text 
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