H. M. Boechat-Roberty1 - S. Pilling1,2 - A. C. F. Santos3
1 - Observatório do Valongo, Universidade Federal do Rio de
Janeiro, Ladeira Pedro Antônio 43, CEP 20080-090, Rio de Janeiro,
Brazil
2 -
Instituto de Química, Universidade Federal do Rio
de Janeiro, Ilha do Fundão, CEP 21949-900, Rio de Janeiro,
Brazil
3 -
Instituto de Física, Universidade Federal do Rio de
Janeiro, Caixa Postal 68528, CEP 21941-972, Rio de Janeiro,
Brazil
Received 21 December 2004 / Accepted 1 April 2005
Abstract
Formic acid is much more abundant in the solid state, both
in interstellar ices and cometary ices, than in the interstellar gas
(ice/gas
)
and this point remains a puzzle. The goal of
this work is to experimentally study ionization and
photodissociation processes of HCOOH (formic acid), a glycine
precursor molecule. The measurements were taken at the Brazilian
Synchrotron Light Laboratory (LNLS), employing soft X-ray photons
from toroidal grating monochromator TGM) beamline (200-310 eV).
Mass spectra were obtained using photoelectron photoion coincidence
(PEPICO) method. Kinetic energy distributions and abundances for
each ionic fragment have been obtained from the analysis of the
corresponding peak shapes in the mass spectra. Photoionization and
photodissociation cross sections were also determined. Due to the
large photodissociation cross section of HCOOH it is possible that
in PDRs regions, just after molecules evaporation from the grain
surface, formic acid molecules are almost totally destroyed by soft
X-rays, justifying the observed low abundance of HCOOH in the
gaseous phase. The preferential path for the glycine formation from
formic acid may be through the ice phase reaction.
Key words: astrochemistry - molecular processes - ISM: abundances - ISM: molecules - X-rays: ISM - astrobiology
The simplest amino acid, glycine, (NH2CH2COOH), was recently detected in the molecular clouds SgrB2, Orion KL and W51 (Kuan et al. 2003, 2004). In these objects the precursor molecules like ammonia, formic acid and acetic acid have already been observed (Turner 1991; Sutton et al. 1985). Liu et al. (2002) pointed out the importance of performing studies on formic acid since it is the simplest organic molecule and shares common structural elements with biologically important species such as acetic acid and glycine.
Sgr B2, Orion KL and W51 are massive star-forming regions where the presence of widespread UV and X-ray fields could trigger the formation of photodissociation regions (PDRs). X-ray photons are capable of traversing large column densities of gas before being absorbed. X-ray-dominated regions (XDRs) in the interface between the ionized gas and the self-shielded neutral layers could influence the selective heating of the molecular gas. The complexity of the region possibly allows a combination of different scenarios and excitation mechanisms to coexist within the complex (Goicoechea et al. 2004).
The formation of HCOOH in molecular clouds by gas-phase reactions
has been suggested by Irvine et al. (1990). On the other hand,
experiments and models of grain-surface chemistry suggest that HCOOH
is also readily produced in icy grain mantles (Tielens & Hagen
1982; Allamandola & Sandford 1990; Charnley 1995). Upon mantle
evaporation, HCOOH will be released into the gas phase and can be
detected at millimeter wavelengths (Liu et al. 2001, 2002).
Ehrenfreund et al. (2001) have shown that formic acid is more
abundant in the solid state, both in interstellar ices and cometary
ices, than in the interstellar gas (ice/gas
); this
point remains a puzzle and more laboratory work is necessary to
clarify this question.
Sorrell (2001) has proposed the formation of the carboxyl group (COOH) as a stable radical in the UV photolysis of H2O/CO ice. Reactions in the gas phase and in the ice phase ("ice-solvated phase'') have been considered by Woon (2002) via quantum chemical modeling. Mendoza et al. (2004) have shown by theoretical calculations that COOH can also be generated on graphitic surfaces via adsorbate-adsorbate reactions.
The photodissociation of formic acid has been studied experimentally and theoretically in the vacuum ultraviolet (VUV) region (Su et al. 2000; Tabayashi et al. 1999; Schwell et al. 2002). However the results cannot explain the ice/gas ratio, since about 20% of formic acid survives the UV radiation. Despite some photo absorption studies in the X-ray range (Ishii & Hicthcock 1987; Prince et al. 2003) there are no studies focusing on the photodestruction of molecules by soft X-rays. The question about the relative abundances of formic acid in solid and gas phase is still open (Ehrenfreund et al. 2001). The present work aims to examine the photodissociation of formic acid by soft X-rays, at energies around the carbon K edge.
The experimental set-up has been described in detail elsewhere (Lago
et al. 2004 and de Souza et al. 2000). Briefly, the experiment was
performed at the Brazilian Synchrotron Light Source (LNLS),
Campinas, São Paulo, Brazil. Soft X-rays photons (
1012photons/s) from a toroidal grating monochromator (TGM) beamline
(100-310 eV) perpendicularly intersect the effusive gaseous sample
inside a high vacuum chamber. The base pressure in the vacuum
chamber was in the 10-8 Torr range. During the experiment the
chamber pressure is maintained below 10-5 Torr. The gas needle
is kept at ground potential. The emergent photon beam is recorded by
a light sensitive diode. The sample was commercially obtained from
Sigma-Aldrich with purity better than 99.5%. No further
purification was used except for degassing the liquid sample by
multiple freeze-pump-thaw cycles before admitting the vapor into the
chamber. Conventional time-of-flight mass spectra were obtained
using the correlation between one Photoelectron and a Photoion
Coincidence (PEPICO). The ionized recoil fragments produced by the
interaction with the photon beam are accelerated by a two-stage
electric field and detected by two micro-channel plate detectors in
a chevron configuration after being mass-to-charge (m/q) analyzed by
a time-of-flight mass spectrometer (TOF-MS). They produce up to
three stop signals to a time-to-digital converter (TDC) started by
the signal from one of the electrons accelerated in the opposite
direction and recorded without energy analysis by two micro-channel
plate detectors. Besides PEPICO spectra, other two kinds of
coincidence mass spectra were obtained simultaneously (Pilling et al. 2005, in prep.): PE2PICO spectra (PhotoElectron Photoion
Photoion Coincidence) and PE3PICO spectra (PhotoElectron Photoion
Photoion Photoion Coincidence). Those spectra have ions coming from
double and triple ionization process, respectively, that arrive
coincidentally with a photoelectron. In both cases the multiple
ionization is associated with the Auger process. Of all signals
received by the detectors only about 10% come from PE2PICO and 1%
from PE3PICO spectra, reflecting that the majority contribution is
indeed due to single event coincidence.
The pressure at the interaction region (volume defined by the gas
beam and the photon beam intersection) was estimated to be
1 Torr. At this pressure about 30% of HCOOH molecules are dimers
(Halford 1942; Barton et al. 1969) but no obvious consequences of
these clusters were seen in the detected spectra. The measurements
were done at room temperature.
The first stage of the electric field (708 V/cm) consists of a plate-grid system crossed by the light beam at the center. The TOF-MS was designed to have a maximized efficiency for ions with energies up to 30 eV (Willey & McLaren 1955). The secondary electrons produced in the ionization region are focused by an electrostatic lens polarizing the electron grid with 800 V, designed to focus them at the center of the micro-channel plate detector. Negative ions may also be produced and detected, but the corresponding cross-sections are negligible. Our experimental setup does not have an electron energy analyzer to measure the photoelectron energies.
Figure 1 shows a mass spectrum of the formic acid
obtained at 300 eV photon energy. Some general observations can be
made. The CO+ ion production is the most likely outcome
(36-40%) in the dissociation of the formic acid molecule in the
energy range studied in the present work. This is followed by
CH2+ (with a possible contribution of same m/q ion CO++)
(18-27%), O+, HCO+ (or COH+) and O2+ (
14%)
fragments, the latter coming from rearrangements. The CH2+ + CO++ peak rises to very broad structures usually associated
with a large intrinsic kinetic energy.
In Fig. 2 we show details of three regions of a mass
spectrum of formic acid obtained in the energy range from 200 to 310 eV, around the C 1s resonance (
,
exhibiting peak profiles of H+, HCO+, COO+, COOH+ and
HCOOH+ ions. To clarify the mechanism leading to the molecular
fragmentation, we observe that the mentioned ions appear in the mass
spectra only above 275 eV suggesting that the main contribution to
the fragmentation processes comes from a resonant-type Auger decay,
which takes place after the electron excitation to unoccupied
Rydberg or antibonding orbitals, and might be responsible for the
appearance of the HCOOH+ parent ion. This kind of resonant-type
Auger decay creates a hole in the valence orbital and its final
state is identical to a direct valence photoionization. Below 275 eV, the hole can be in an inner valence orbital, favoring the full
molecular fragmentation preferentially into the CO+ plus neutrals
or CH2+ plus neutrals.
The reactive ions CO+ and COH+ that are photodissociation product, were detected toward the H II region Monoceros R2 (Rizzo 2003) and in three photodissociation region, the reflection nebula NGC 7023, the Orion Bar and the planetary nebula NGC 7027 (Fuente et al. 2003). Usero et al. (2004) reported the first extragalactic detection of the reactive ion COH+ in the circumnuclear disk of Active Galactic Nuclei, NGC 1068. They concluded that X-rays can heavily influence the physical conditions and chemical abundances of molecular gas and that the circumnuclear disk has become a giant X-ray Dominated Region (XDR).
Another feature is the fate of the H+, C+ and CH+ ions below 280 eV photon energy. One possible explanation for this behavior is the fact that dissociation occurs less often. It seems to be associated with the fate of the parent molecule. One possibility is that the molecule remains intact and neutral. Only radiative decay could result in uncharged molecules, but the radiative yields are expected to be very low in the present energy range. Corresponding to the increase in the H+, C+ and CH+yields is a relative decrease in the relative yields of CH2+ + CO++, suggesting that the peak at m/q=14 is dominated by the CH2+ and not by the doubly charged CO++ fragment. From the mass spectra one can observe an increase in the H+ peak intensity due to the increase in the kinetic energy release as a function of the photon energy (2.2 eV at 280 and 290 eV, 3.9 at 300 eV and 4.8 at 310 eV). Below 280 eV, the kinetic energy of the H+ fragment is not enough to escape, being recaptured to form the CH2+ ion. As the photon energy increases, so does the kinetic energy of H+, increasing the probability of forming H+.
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Figure 1: Time-of-flight mass spectrum of HCOOH molecule recorded at 300 eV. |
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Figure 2: Time-of-flight mass spectra of formic acid molecule showing details of H+, HCO+ ( left panel) and CO2+, COOH+ and HCOOH+ ions ( right panel) for several photon energies. |
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Figure 3: Partial ion yield (PIY) of some PEPICO fragments of HCOOH molecule as a function of photon energy. |
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The doubly charged fragments O++ and CH2++ are also observed from 275 eV and above. The absence of more doubly ionized fragments in the PEPICO spectra indicates that the doubly ionized formic acid dissociates preferentially via charge separation. The dynamics of the doubly ionized formic acid molecule will be the subject of a future publication.
Figure 3 shows the partial ion yields (PIY) for the most significant outcomes in the dissociation of formic acid in the 200-310 eV photon energy range, the yields of H+, HCO+, COOH+ and HCOOH+ are also shown. A small dip can be seen in the fractions of CO+ and O2+ at the C1s edge. Above 290 eV this fraction shows a drop as a function of energy. The fraction of CH2+ fragments also drops around the C 1s edge while the fraction of the C+, CH+, HCO+, OH+ and H+ exhibit a gradual increase, being totally absent below 275 eV. This observation strongly indicates that H+, C+, CH+, H2O+, OH+, and HCO+ are only formed after the normal-type Auger decay (a small contribution of HCO+ of roughly 0.3% is observed at 275 eV).
![]() |
Figure 4: Comparison between partial ion yield (PIY) in soft X ray field and UV field. |
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In Fig. 4 we show a comparison between partial ion
yield in soft X-rays (290 eV) obtained at LNLS with the one in UV
(by 70 eV electrons)
from NIST
. The molecular ion
HCOOH+ is more destroyed by soft X-rays than by a low UV field.
The partial ion yields of several fragments also present
![]() |
Figure 5: Comparison between partial ion yield (PIY) of HCOOH (this work) and CO2 (Hitchcock et al. 1979). |
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A comparison of partial ion yield results of the HCOOH and CO2molecules measured at photon energies of 290 and 291 eV, respectively, can be seen in Fig. 5. The CO2 survives about 10% more than HCOOH and its main products by photodissociation are O+ and C+ at 40% and 27%, respectively. Those ionic fragments represent only 13% and 1% of all fragments in the case of formic acid photodissociation. The HCOOH dissociation is two times more efficient for CO+ production than CO2 dissociation.
From the observations described in the preceding paragraphs, we
suggest that below the C 1s edge, the fragmentation of the formic
acid molecule is dominated by the pathways
HCOOH + |
|
HCOOH
|
| HCOOH+ |
|
CO+ + H2O (or H + OH) |
| HCOOH+ |
|
CH2+ + O2 (or O + O) |
| HCOOH+ |
|
O+ + HCOH (?) |
| HCOOH+ |
|
O2+ + CH2 (or CH + H) |
| HCOOH+ |
|
HCO+ + OH (or O + H). |
Several authors have recently focused on the pathway of formation of biomolecules present in the star-forming region and other gaseous-dusty astronomical media (Largo 2004; Woon 2002, and references therein). Despite the success of ab initio theoretical calculations, the endothermic ion-molecule reactions have always been discounted, and only exothermic reactions have been accepted as a viable mechanism. However, with the knowledge of the kinetic energy (or at least with its value range) of some radical and ionic fragments, some endothermic ion-molecule reactions could be competitive and, in extreme situations, even become more efficient than those exothermic reactions.
We have determined the kinetic energy of all cationic fragments from the photodissociation of formic acid.
The present time-of flight spectrometer was designed to fulfil the
Wiley-McLaren conditions for space focusing (Wiley & McLaren 1955).
Within the space focusing conditions, the observed broadening of
peaks in spectra is mainly due to kinetic energy release of
fragments. Considering that the electric field in the interaction
region is uniform, we can determine the released energy in the
fragmentation process (U0) from each peak width used by Simon et al. (1991), Hansen et al. (1998), Santos et al. (2001)
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(1) |
Table 1: Relative intensities (partial ion yield - PIY) and kinetic energy U0 release by fragments in the formic acid mass spectra, as a function of photon energy. Only fragments with intensity >0.1% were tabulated. The estimated experimental error was 10%
We observe that the highest kinetic energy release was associated with the lightest fragment H+ (m/q=1), as expected. Extremely fast ionic fragments (U0 > 10 eV), usually associated with dissociation of doubly or multiply-charged ions were also observed at high photon energies. These observations point to the important role of Auger process ion fragmentation of core-ionized polyatomic molecules. The Coulomb explosion associated with the Auger process should explain the increase in kinetic energy of the ionic fragments, reflected in the increasing broadening of several fragments. This broadening observed in simple coincidence spectra (PEPICO) and its consequence on the shape of peaks in mass spectra has been discussed by Simon et al. (1993).
Averaging the kinetic energy release U0 of each fragment by the
fragmentation PIY we have found the mean kinetic energy release
due to a photon of energy
,
considering all fragments in single coincidence spectra.
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(2) |
![]() |
(3) |
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Figure 6: Mean Kinetic temperature of ionic fragments of formic acid molecule as a function of photon energy. |
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We have found the value
K (
0.9 eV). This result
shows that photoionization by an X-ray field can increase the local
temperature since several fragments could reach high values of
kinetic energy.
As the C 1s ionizing potential of formic acid is 295.8 eV (Prince et al. 2003) and using soft X-ray photons, the heating H produced by ejected inner shell photoelectrons is about 5-15 times greater than that caused by ionic fragments.
The study of the decay of core-excited molecules provides
information about the bonding or antibonding nature of the molecular
orbitals. Generally, the final electronic states of a core excited
molecule are unknown due to the fact that the densities of the
states are very high, and the bond distances and angles differ from
their ground state configuration. The surface potentials of the
ionic states are extremely repulsive. For core excited molecules
which dissociate in one charged and one or more neutral fragments,
the dissociation is primarily controlled by chemical (non-Coulomb)
forces originating from the residual valence electrons of the system
(Nenner & Morin 1996). From Table 1, one can see that the mean
kinetic energy release U0 of some formic acid fragments increases
as the photon energy approximates the C 1s edge (288 eV). This
enhancement is due to the repulsive character of the
*
(
*) resonance.
The maximum possible kinetic energy release available to a molecular
fragment is given by the difference between the deposited photon
energy and the appearance energy of the fragment. Lorquet (2000) has
shown that the relationship between the average kinetic energy
release U0 and the internal energy measured in excess of the
dissociation threshold,
,
is not linear. It contains
information about the density of vibrational-rotational states. The
mean kinetic energy release is found to increase as
.
This behavior can be seen in Fig. 6.
Sorrell (2001) proposed a theoretical model for the chemical
manufacture of interstellar aminoacids and sugars, assuming that
those biomolecules are formed inside the bulk interior of icy grain
mantles photoprocessed by starlight (ultraviolet and soft X-rays
photons). His model chemistry is based on radical-radical reactions
followed by chemical explosions of a processed mantle that ejects
large amounts of organic dust into the ambient gaseous medium. The
density number of a given biomolecule in a steady state regime of
creation and destruction inside a gaseous-dusty cloud is given by
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(4) |
As mentioned by Sorrell (2001), the main uncertainty of this model
equilibrium abundance cames from the uncertainty of
value. Therefore the precise determination of
of
biomolecules is very important to estimate the molecular abundance
of those molecules in the interstellar medium. Moreover, knowing the
photon dose
and
value we can also determine
the half-life of given molecule as discussed by Bernstein et al.
(2004).
The photodissociation rates, R, of a molecule dissociated by the
interstellar radiation field
in the energy range,
,
is given by
From Eq. (5) we can also derive the half-life time,
t1/2, of the molecule as
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(6) |
In order to put our data on an absolute scale, we have summed all the contributions of all cationic fragments detected and normalized them to the photoabsorption cross sections measured by Ishii & Hitchcock (1987).
After a subtraction of a linear background and false coincidences
coming from aborted double and triple ionization (see Simon et al.
1991), the integrated true coincidence signal Ifq+ for a given
fragment f with charge q, at constant photon flux and lower
target pressures is given by
Since the absolute target density n as well as the incident number
of photons I0 have not been determined absolutely, we take
as a constant (in cm-2) to determined
for each given energy photon.
The total integrated coincidence signal for a given photon energy
and final charge state q+ is given by
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(8) |
![]() |
(10) |
![]() |
(12) |
![]() |
(13) |
![]() |
(14) |
Both cross sections can be seen in Fig. 7 as a function of photon energy. The absolute absorption cross section of formic acid (Ishii & Hitchcoch 1987) is also shown for comparison. Those values are also shown in Table 2.
The cross sections determined here should be useful in discussions of interstellar chemistry.
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Figure 7:
Non-dissociative single ionization (photoionization) cross
section (
|
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Table 2:
Values of non-dissociative single ionization
(photoionization) cross section (
)
and dissociative
ionization (photodissociation) cross section (
)
of
formic acid as a function of photon energy. The estimated
experimental error was 30%. The photoabsorption cross section
from Ishii & Hitchcock (1987).
The goal of this work is to experimentally study ionization and photodissociation processes of a glycine precursor molecule, HCOOH (formic acid). The measurements were taken at the Brazilian Synchrotron Light Laboratory (LNLS), employing soft X-ray photons from a toroidal grating monochromator TGM) beamline (200-310 eV). The experimental set-up consists of a high vacuum chamber with a time-of-flight mass spectrometer TOF-MS. Mass spectra were obtained using PhotoElectron PhotoIon Coincidence (PEPICO) technique. Kinetic energy distributions and abundances for each ionic fragment were obtained from the analysis of the corresponding peak shapes in the mass spectra.
We have shown that the X-ray field interactions with formic acid release a considerable number of energetic fragments, some of then with high kinetic energy (ex. H+, CH+, O+) and some with extreme high kinetic energy (CO+++, CO++, O++). Those energetic fragments promote an increase in the local temperature of a region. An extension of this scenario to interstellar medium conditions could justify (or promote) some endothermic ion-molecule reactions and become important in elucidating some pathways of formation of complex molecules (Largo et al. 2004).
Dissociative and non-dissociative photoionization cross sections were also determined. Due to the high photodissociation cross section of formic acid it is possible that in PDR regions, just after molecule evaporation from the grain surface, it is almost destroyed by soft X-rays, justifying the observed low abundance of HCOOH in the gaseous phase. This result could indicate that the preferential path for the glycine formation via formic acid may be through ice.
Acknowledgements
The authors would like to thank the staff of the Brazilian Synchrotron Facility (LNLS) for their valuable help during course of the experiments. We are particularly grateful to Professor G. G. B. de Souza and Professor A. N. de Brito for the use of Time-of-Flight Mass Spectrometer. This work is supported by LNLS, CNPq and FAPERJ.